rs32698538 SNP Detail

Summary

• ID
  rs32698538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:40530324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTAATA CATTGTGAGA
  GGCAGCCACA GTGGAACAAA AGCAAAATCA ATGGCATCTG TCTTCAGAAA ACTCCTCTGG
  ATTCCAGACA TCACTGAGTC CTGATGCAAG CAGATTTGGG AATGACAACC TTCACAGAGG
  CAGAGAGAGA GAGGGGAAAT GCAAAAATCC ATTTCTGGTC TGAAGAAATC CATTTTTGAT
  Y
  GTCAAAACCC AAATCAGTGA TTGAGTCACT TCTAAATGAT TATTCCCCCT TTGAAATCCT
  CAGTCAAACA TAAGTTCATA ATTCTGTCAT ATATACTTGG CAGAAGATAG TCTGAGGCGG
  GATAGTATTG GGAACTTCCT CCACAAGAGA TGCAGAGCTC AGGAGGAGAC TGACCTTGGT
  TTACATGAAT GTCCATTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48200148	NES11811557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32698538					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48200148	NES11811557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:40530324 () rs orientation: forward

Symbol	Name	Function Class
A230077H06Rik	RIKEN cDNA A230077H06 gene	within coordinates
Gm25784	predicted gene, 25784	1162 bp downstream
Gm28307	predicted gene 28307	within coordinates