rs32698708 SNP Detail

Summary

• ID
  rs32698708
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87209897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT ATGCATGCTT TATTCCTGCC
  W
  GTCAAGCGGC CTCCAGCGGC TCGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45181471	mCV24367554	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					T		A
ss60763992	NES16393993	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	T	A	A		A	A	A	A		T	A		A
ss144881133	ENSMUSSNP5068840	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss319829219	CHEV_1_89178750	CHEVERUD	SCREENING_POP	f	SNP													T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32698708					SNP	A	A	A	T	T	A	A	T	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763992	NES16393993	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87209897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efhd1	EF hand domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr414772	regulatory region 414772			within coordinates
Rr414773	regulatory region 414773			144 bp distal
Rr414774	regulatory region 414774			3 bp proximal
Tssr7837	transcription start site region 7837			413 bp downstream