rs32701333 SNP Detail

Summary

• ID
  rs32701333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAG CAATTCGCTT AGAGCAATTC
  R
  CGAAGCCTTC AGGTACTCCA AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45683040	mCV24238761	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		A
ss46784463	NES10993757	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G		G	A	G		G	A	G		A
ss148117624	ENSMUSSNP6050001	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss321443275	CHEV_4_155214124	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32701333					SNP	A	A	A	A	A	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784463	NES10993757	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	797 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	Intron
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1169 bp upstream
Rr606588	regulatory region 606588	1780 bp distal
Rr606589	regulatory region 606589	279 bp distal
Rr606590	regulatory region 606590	153 bp proximal
Rr606591	regulatory region 606591	1069 bp proximal
Rr606592	regulatory region 606592	1096 bp proximal
Rr606593	regulatory region 606593	1132 bp proximal
Tssr40724	transcription start site region 40724	331 bp downstream
Tssr40725	transcription start site region 40725	311 bp downstream
Tssr40726	transcription start site region 40726	253 bp downstream
Tssr40727	transcription start site region 40727	191 bp downstream
Tssr40728	transcription start site region 40728	175 bp downstream
Tssr40729	transcription start site region 40729	1086 bp upstream
Tssr40730	transcription start site region 40730	1106 bp upstream
Tssr40731	transcription start site region 40731	1131 bp upstream
Tssr40732	transcription start site region 40732	1153 bp upstream
Tssr40733	transcription start site region 40733	1397 bp upstream
Tssr44980	transcription start site region 44980	1013 bp downstream
Tssr44981	transcription start site region 44981	1079 bp downstream