rs32701762 SNP Detail

Summary

• ID
  rs32701762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180233607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTCCCT CTCAGCCTTG
  TGAGTTGGAG GGAGGCTGAG GCGGGCCAGC TCCTGGTGCA GGCATGGGCT CTGTGTGGTC
  AGGCATTTCC CCATCTGCCA CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC
  TTCCTCCTCC TCCTCTTCAC TGCTGTCATT TTTAGTTCTG GAAGGAGGAG AGAAGCCAAG
  Y
  GGTGACCTTC ACATCAGAGA CAGCGATTGC TGGGCCACCT GGCAGGGAAA CCCAGGAACA
  TGAAGGGCAC CTCAGCTCTC GGGCAGTAAA AACAAAGACT GGTTTGCAGG GATGGCAGTC
  CCCTTTGGCA GCAGCTCAGG AAAGTCAGGC TTGGGGGAGA AGAATTACCT GAAGCAAGGT
  CTCTAGTGCA AGATCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46717141	NES10686947	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32701762					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46717141	NES10686947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180233607 () rs orientation: forward

Symbol	Name	Function Class
Gm39712	predicted gene, 39712	107 bp upstream
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424494	regulatory region 424494	548 bp proximal
Rr424495	regulatory region 424495	1224 bp proximal