rs32702828 SNP Detail

Summary

• ID
  rs32702828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180233839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACCTG GCAGGGAAAC
  CCAGGAACAT GAAGGGCACC TCAGCTCTCG GGCAGTAAAA ACAAAGACTG GTTTGCAGGG
  ATGGCAGTCC CCTTTGGCAG CAGCTCAGGA AAGTCAGGCT TGGGGGAGAA GAATTACCTG
  AAGCAAGGTC TCTAGTGCAA GATCTTTCTT TGCTGTGGTC CCTAGAGTCC CAGCTACATG
  Y
  GATGGCTGTC CGTGAAAACA TCCAAAGTCC CAGAGCAAGA GGGAAAGAGA AGAAAGTAGC
  CCAGACCCCA GACCTTTCCA GTCACGAGTG TTTTGGATAA GGGAGATAGA CAGATGAGGG
  ACAGGAAGAT GGCATGTCCT GCAGGGTCTC AGGCACACAG AGAGTGGGGT GTGAAGTGAG
  TGGGGGAGGG GAGTATCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46717150	NES10686950	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32702828					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46717150	NES10686950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180233839 () rs orientation: forward

Symbol	Name	Function Class
Gm39712	predicted gene, 39712	339 bp upstream
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424494	regulatory region 424494	316 bp proximal
Rr424495	regulatory region 424495	992 bp proximal