rs32704839 SNP Detail

Summary

• ID
  rs32704839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44216539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATAACA GCCAGTGCTC
  TTAACTGCTG GGGTATCTCT CCTCTCCAGC TCCCATGAAA AGAAAATTTA AAGATAAAAT
  GGATTAGAGA AACAGAGTAG GAGCAGAGGG TATCTGCAGT GACAGGGACA GTGAGCCTGG
  TACTTAAAGA GGTGAGGACA AGGGTGAAAG CATAAGTCTT CATAGCTGGC CATTTGGCAA
  Y
  GCGTCTTGGA AATAGATTGC ATGAGGTGGG TGATAGGGAA GGACGAAATA TCTAACTGCT
  CTTCTTTCTC ACTTGCAAAA TTGTGATATT AGCATCTGCC TTGTATTTTA AAAGCAAGTG
  AGATCATGTG TGCAGAGAAT TTTAGACTTG TGTTTGCCAT CAGATAAGAA CCCCAACAAC
  AAGCAAGCAA GCAAGCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48201329	NES12138217	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32704839					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48201329	NES12138217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44216539 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	within coordinates
Rr391716	regulatory region 391716	1514 bp upstream
Rr516304	regulatory region 516304	1367 bp distal
Rr516305	regulatory region 516305	504 bp distal
Rr516306	regulatory region 516306	300 bp proximal
Rr516307	regulatory region 516307	947 bp proximal
Tssr138551	transcription start site region 138551	1372 bp downstream
Tssr138552	transcription start site region 138552	1350 bp downstream