rs32704841 SNP Detail

Summary

• ID
  rs32704841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44216553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCTTAA CTGCTGGGGT
  ATCTCTCCTC TCCAGCTCCC ATGAAAAGAA AATTTAAAGA TAAAATGGAT TAGAGAAACA
  GAGTAGGAGC AGAGGGTATC TGCAGTGACA GGGACAGTGA GCCTGGTACT TAAAGAGGTG
  AGGACAAGGG TGAAAGCATA AGTCTTCATA GCTGGCCATT TGGCAACGCG TCTTGGAAAT
  R
  GATTGCATGA GGTGGGTGAT AGGGAAGGAC GAAATATCTA ACTGCTCTTC TTTCTCACTT
  GCAAAATTGT GATATTAGCA TCTGCCTTGT ATTTTAAAAG CAAGTGAGAT CATGTGTGCA
  GAGAATTTTA GACTTGTGTT TGCCATCAGA TAAGAACCCC AACAACAAGC AAGCAAGCAA
  GCAAACAAGC AAGCAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48201331	NES12138219	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32704841					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48201331	NES12138219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44216553 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	within coordinates
Rr391716	regulatory region 391716	1500 bp upstream
Rr516304	regulatory region 516304	1381 bp distal
Rr516305	regulatory region 516305	518 bp distal
Rr516306	regulatory region 516306	286 bp proximal
Rr516307	regulatory region 516307	933 bp proximal
Tssr138551	transcription start site region 138551	1386 bp downstream
Tssr138552	transcription start site region 138552	1364 bp downstream