rs32704843 SNP Detail

Summary

• ID
  rs32704843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44216589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGAAA AGAAAATTTA
  AAGATAAAAT GGATTAGAGA AACAGAGTAG GAGCAGAGGG TATCTGCAGT GACAGGGACA
  GTGAGCCTGG TACTTAAAGA GGTGAGGACA AGGGTGAAAG CATAAGTCTT CATAGCTGGC
  CATTTGGCAA CGCGTCTTGG AAATAGATTG CATGAGGTGG GTGATAGGGA AGGACGAAAT
  R
  TCTAACTGCT CTTCTTTCTC ACTTGCAAAA TTGTGATATT AGCATCTGCC TTGTATTTTA
  AAAGCAAGTG AGATCATGTG TGCAGAGAAT TTTAGACTTG TGTTTGCCAT CAGATAAGAA
  CCCCAACAAC AAGCAAGCAA GCAAGCAAAC AAGCAAGCAA GCAAGCAAGC AAGCAAGCAA
  GCAAGCAAAA AGACCCTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48201333	NES12138221	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32704843					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48201333	NES12138221	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44216589 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	within coordinates
Rr391716	regulatory region 391716	1464 bp upstream
Rr516304	regulatory region 516304	1417 bp distal
Rr516305	regulatory region 516305	554 bp distal
Rr516306	regulatory region 516306	250 bp proximal
Rr516307	regulatory region 516307	897 bp proximal
Tssr138551	transcription start site region 138551	1422 bp downstream
Tssr138552	transcription start site region 138552	1400 bp downstream