rs32704869 SNP Detail

Summary

• ID
  rs32704869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160903680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tctcacaca cacacacaca cacacacaca
  cacacacaca cacacacacC TTTGTTCTAA ATGATAGCTG GAGCTGGGAG ACCATGTCAG
  AAAATATGGA CTTTAGAAGT TCCTCAGGAG GAAGCCAGGA GCTTTTCGAC AGTCAGTACT
  Y
  TTATGCTGTT CTTAACCCTT TAGCTAATGA ATAAATGAGG GCTAGTTCAC TTAATTCATT
  TTAATACTGC TATGGAGCCA ATACAAATAA AGCTTGCttg ttttttttta gtttttgttt
  ttgtttttTC TGTTTGTTTA CTTTTACttt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45183393	mCV24547392	ABI	CRAMUS_MOUSE	f	SNP		C			T
ss49524746	NES12817481	PERLEGEN	MM_PANEL2	f	SNP		C	T	T		C		T	T		T		T
ss145905498	ENSMUSSNP7102039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C
ss320080234	CHEV_1_163006241	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs32704869					SNP	C	C	T	T	T	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49524746	NES12817481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160903680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			177 bp upstream
Rr421754	regulatory region 421754			124 bp proximal