rs32705220 SNP Detail

Summary

• ID
  rs32705220
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82213200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCACACT GCAAAAATAG
  CAGTACCCAC TTTGGTCAAT TAAAACAAAC AAACAAATAA ACAAACAAAC AAAAAAAGCA
  TACATTATTT CTTTTTTAAA TCTGTGTACT TACCTATAAT AACCAATACA GCTAAAAGCA
  CTACCTACAT AGGCAAAACT TGGTATTGCA TAATTCGTAT AAATTTGAAA CCCCTCCCCC
  M
  CAAATATTAA TTGGAAGATG AAAAACATGA AAGGTTAATA GAAAAAACAC CAAAAATACT
  GAAAATATTG CTGGTCGATT ACAATTTTTA AGCGGCAACT ATACACAGCC ATGATATGCT
  TTATAAATGT GAGATAAAGG TGTAACTGTC TAAAAAATCC ATGATGTCAC ACATTTTTCT
  TCGTCTGGAG TACAAAATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45683495	mCV23319088	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss146860439	ENSMUSSNP3953177	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32705220					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82213200 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr42221	transcription start site region 42221			1693 bp upstream
Tssr42222	transcription start site region 42222			1266 bp upstream
Tssr42223	transcription start site region 42223			1066 bp upstream
Tssr42224	transcription start site region 42224			577 bp upstream
Tssr42225	transcription start site region 42225			505 bp upstream
Tssr42226	transcription start site region 42226			278 bp upstream
Tssr42227	transcription start site region 42227			237 bp upstream
Tssr42228	transcription start site region 42228			170 bp upstream
Tssr42229	transcription start site region 42229			4 bp upstream
Tssr42230	transcription start site region 42230			407 bp downstream
Tssr42231	transcription start site region 42231			914 bp downstream
Tssr42232	transcription start site region 42232			1287 bp downstream
Tssr42233	transcription start site region 42233			1677 bp downstream
Tssr42234	transcription start site region 42234			1713 bp downstream