rs32708309 SNP Detail

Summary

• ID
  rs32708309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123559170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                AGC
  CCCAGCCGGG ACTGATACGG GAGGCCGAAG GGAACGGTAC GACCCCAAAG AAGCCCGGGA
  W
  CAAAGAGTTG TCCAGAAACA GACGAAACTG AAGTGGAAGC GAGGGCGACA GAGCCATCAC
  CATAAAGTAA ACCAGGCCAA GGAGCAGAGC CTGAGAAATG ACAACTGAGA GAGCGATGAA
  AACACGATTC TGACCGCACA TGGGGGGAGG GCGTAAATCC AAGGGGGGAG ACCCAATAGG
  ATTACTAAAG TGTGACAGCC CTCTCCACAC GGCGACTTAG ATCAAAAGGG AGAAATGTGG
  GAACCTGAGG CTGCACCAGG ACTGGCAGGG AACAAAGGAA GGATTCTGGA GCAAAACTGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45683639	mCV23036672	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs32708309					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123559170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14755	CpG island 14755	within coordinates
Gm12925	predicted gene 12925	504 bp upstream
Macf1	microtubule-actin crosslinking factor 1	within coordinates
Rr84970	regulatory region 84970	1231 bp proximal
Rr99952	regulatory region 99952	within coordinates
Rr377112	regulatory region 377112	1270 bp downstream
Rr377113	regulatory region 377113	403 bp upstream
Tssr38865	transcription start site region 38865	545 bp downstream
Tssr43288	transcription start site region 43288	572 bp upstream
Tssr43289	transcription start site region 43289	91 bp downstream
Tssr43290	transcription start site region 43290	124 bp downstream