rs32716054 SNP Detail

Summary

• ID
  rs32716054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76366106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATAAATG CATATGTACA TATATGCATT TAGTTACTTA
  TATTAATTGT CCAACTTCAC TGGCCAAGAA TTTTTGCCAT ATAACTGCCA CAAAAGGAGA
  R
  TTGACACATC TGCCTCTTTA CATGTCATCA GAAAGTATTA TCTCAGCCAT CTGCCTTAAA
  ATACATCTGA GGGCCACTTT TCCTATTTGA GTCCCGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45684561	mCV24416627	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146590067	ENSMUSSNP5570868	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32716054					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76366106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	1459 bp proximal
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr90206	regulatory region 90206	106 bp distal
Rr101140	regulatory region 101140	within coordinates
Tssr42162	transcription start site region 42162	1899 bp downstream