rs32716800 SNP Detail

Summary

• ID
  rs32716800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78635231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGT TTATATTGAG ATTTATGCAT
  M
  GCAGCAGTGA AGGCGGGTTT TGCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45184994	mCV22632344	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss144751881	ENSMUSSNP3740495	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss319804035	CHEV_1_78654089	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32716800					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78635231 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	369 bp upstream
Cpgi461	CpG island 461	within coordinates
Rr17618	regulatory region 17618	631 bp distal
Rr29694	regulatory region 29694	within coordinates
Rr371565	regulatory region 371565	1814 bp downstream
Rr396121	regulatory region 396121	183 bp upstream
Tssr7581	transcription start site region 7581	342 bp upstream
Tssr7582	transcription start site region 7582	360 bp upstream
Tssr12428	transcription start site region 12428	759 bp downstream
Tssr12429	transcription start site region 12429	776 bp downstream
Utp14b	UTP14B small subunit processome component	369 bp upstream