rs32718331 SNP Detail

Summary

• ID
  rs32718331
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9529952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCATTTC CACTTTCTCC
  AGAAACAGCT TGAATTAAGC AGAAAACTAT AGCGAAAGCT CTACCCAGAG CCATCATTCT
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAAAGAAT AGAGAAGAAG
  CACGCTTGTA TGTGCAAGTG AATGAGAGAG AGGGAGACCC AAACCAGCTC TGTGCCTGCT
  W
  AACCACAGAC AGGGAACTAT GAACATCACA GAAGAAGGCA AGTGCCAGAA ACAGGAAGTC
  TGAGCAAAAG GATTGCTGCT GTAAGCAGAG GTAGAGAAAA CGGAGAGGTA GAGTGTGACT
  TTTTTTTTTC CTGCATCTTG GTATTCCCTG AAGCTCCTGA ACTTAACTGC TTACTTTTGA
  GCAAGGTGGT AGACTTCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49390549	NES12654075	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32718331					SNP	A	A	T	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390549	NES12654075	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9529952 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	within coordinates
Rr499183	regulatory region 499183	1103 bp distal
Rr499184	regulatory region 499184	within coordinates
Tssr130646	transcription start site region 130646	1383 bp downstream
Tssr130647	transcription start site region 130647	1363 bp downstream
Tssr130648	transcription start site region 130648	1326 bp downstream
Tssr133701	transcription start site region 133701	1814 bp upstream
Tssr133702	transcription start site region 133702	1778 bp upstream
Tssr133703	transcription start site region 133703	158 bp upstream
Tssr133704	transcription start site region 133704	94 bp upstream
Tssr133705	transcription start site region 133705	20 bp upstream
Tssr133706	transcription start site region 133706	1 bp upstream
Tssr133707	transcription start site region 133707	2 bp downstream
Tssr133708	transcription start site region 133708	166 bp downstream
Tssr133709	transcription start site region 133709	268 bp downstream
Tssr133710	transcription start site region 133710	445 bp downstream