rs32719098 SNP Detail

Summary

• ID
  rs32719098
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9529460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGTATG TTGAAGAAAT
  ACATTATAGA GTAACTTCTA AACTCTAGAC ACTAGAAATA CAGTTTTGGT GAATACACAA
  ACCTCTCGTT TCTGGCCATT AATTTATCAT GGGTATCTAG GGTTTTAGAA CTCCATAAAC
  AGTCAAAACA ACAATGGCTT GATTTTTCAG TCTAATACAG TTTTGGAAGC GATCATCCAA
  M
  AAGCTCCAAC AAAGAACTGA TATGAGGTTT CTTTTTTGAA ATTACCAGCA TACATCCACA
  TTTATGAGCC AGAATTTGAA TGAAACTCAA TGCTTCTTGA CAGTTCTTGA GAGTTACAAG
  CCATTTGCAG TATTGTCATC ATTCCCTCTG TCCTGGTGAT TAATACCCAC AAAACAACCT
  AATTAGTGCT AAATTCTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49390556	NES12654058	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32719098					SNP	A	A	C	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390556	NES12654058	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9529460 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	366 bp proximal
Rr499183	regulatory region 499183	611 bp distal
Rr499184	regulatory region 499184	444 bp proximal
Tssr130646	transcription start site region 130646	891 bp downstream
Tssr130647	transcription start site region 130647	871 bp downstream
Tssr130648	transcription start site region 130648	834 bp downstream
Tssr133701	transcription start site region 133701	1322 bp upstream
Tssr133702	transcription start site region 133702	1286 bp upstream
Tssr133703	transcription start site region 133703	323 bp downstream
Tssr133704	transcription start site region 133704	364 bp downstream
Tssr133705	transcription start site region 133705	439 bp downstream
Tssr133706	transcription start site region 133706	476 bp downstream
Tssr133707	transcription start site region 133707	494 bp downstream
Tssr133708	transcription start site region 133708	658 bp downstream
Tssr133709	transcription start site region 133709	760 bp downstream
Tssr133710	transcription start site region 133710	937 bp downstream