rs32719099 SNP Detail

Summary

• ID
  rs32719099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9529449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCCAAA GCTAAAGTAT
  GTTGAAGAAA TACATTATAG AGTAACTTCT AAACTCTAGA CACTAGAAAT ACAGTTTTGG
  TGAATACACA AACCTCTCGT TTCTGGCCAT TAATTTATCA TGGGTATCTA GGGTTTTAGA
  ACTCCATAAA CAGTCAAAAC AACAATGGCT TGATTTTTCA GTCTAATACA GTTTTGGAAG
  Y
  GATCATCCAA AAAGCTCCAA CAAAGAACTG ATATGAGGTT TCTTTTTTGA AATTACCAGC
  ATACATCCAC ATTTATGAGC CAGAATTTGA ATGAAACTCA ATGCTTCTTG ACAGTTCTTG
  AGAGTTACAA GCCATTTGCA GTATTGTCAT CATTCCCTCT GTCCTGGTGA TTAATACCCA
  CAAAACAACC TAATTAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49390557	NES12654056	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32719099					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390557	NES12654056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9529449 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	377 bp proximal
Rr499183	regulatory region 499183	600 bp distal
Rr499184	regulatory region 499184	455 bp proximal
Tssr130646	transcription start site region 130646	880 bp downstream
Tssr130647	transcription start site region 130647	860 bp downstream
Tssr130648	transcription start site region 130648	823 bp downstream
Tssr133701	transcription start site region 133701	1311 bp upstream
Tssr133702	transcription start site region 133702	1275 bp upstream
Tssr133703	transcription start site region 133703	334 bp downstream
Tssr133704	transcription start site region 133704	375 bp downstream
Tssr133705	transcription start site region 133705	450 bp downstream
Tssr133706	transcription start site region 133706	487 bp downstream
Tssr133707	transcription start site region 133707	505 bp downstream
Tssr133708	transcription start site region 133708	669 bp downstream
Tssr133709	transcription start site region 133709	771 bp downstream
Tssr133710	transcription start site region 133710	948 bp downstream