rs32719854 SNP Detail

Summary

• ID
  rs32719854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9528428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGTGACAT GCCTATGTGA
  CGCATATGGG TGGTTATGAT CATCAATCTA AAAACATTTC AAAATTTAAA AAGGTGAAGT
  GAAAATCCTG TTTAACAGCA AGAATTTTTA CTTTTTTTTT TTTTTTGTAA GAAATAGCAT
  GGCCAAGAGG GAAGCATAGG GGCAAAGGAT TGTACCAAAC AGCAGCATGG TTCTCGTGCT
  Y
  CCTGCCAGCT ATTTGCACAC ATTTAACATG AGATAATGAC TCTCCCTCAC CAAGTGACTC
  ATGCTCCGTC ATGCTGAAGA GTGTGACTCC TCTGATGATT CTCTTCATAA GAACATGCAA
  GGGTTTTCCA TCCTTGCTGA TTACAAAGTA AAGTCACACA AATATCTAAG CTTAGGATGC
  ACAACTAAAG GCATTTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49390563	NES12654151	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32719854					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390563	NES12654151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9528428 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	1398 bp proximal
Rr499183	regulatory region 499183	within coordinates
Rr499184	regulatory region 499184	1476 bp proximal
Tssr130645	transcription start site region 130645	1266 bp downstream
Tssr130646	transcription start site region 130646	130 bp upstream
Tssr130647	transcription start site region 130647	148 bp upstream
Tssr130648	transcription start site region 130648	185 bp upstream
Tssr133701	transcription start site region 133701	290 bp upstream
Tssr133702	transcription start site region 133702	254 bp upstream
Tssr133703	transcription start site region 133703	1355 bp downstream
Tssr133704	transcription start site region 133704	1396 bp downstream
Tssr133705	transcription start site region 133705	1471 bp downstream
Tssr133706	transcription start site region 133706	1508 bp downstream
Tssr133707	transcription start site region 133707	1526 bp downstream
Tssr133708	transcription start site region 133708	1690 bp downstream
Tssr133709	transcription start site region 133709	1792 bp downstream
Tssr133710	transcription start site region 133710	1969 bp downstream