rs32719857 SNP Detail

Summary

• ID
  rs32719857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9527973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTGGAT GGATTTGCAC
  AGAGGTTTCA TTTACATTAC AGTAAGTTCT CAGTAAGGGT GAGAGCTCTC CCAGGAGTCT
  TGGAGAAATC AGTATGAAAG GCAATATGTG AATTATAATT ATGCAAATAT ACATGCAGCA
  TTTGGAGTTT TTTTGAAAAA AAATTGTAGT ATATCAATGG AAGCTTTTAT TCTTACTGTG
  R
  TTTTGACATT ATGTGGAACA ATGGTCACAG TGTTCAATAG GAAGCATCTA AGCATTAAGT
  AAAAATTCTA GGTATAGAAA TTTAAAGCAT TTGGAATACA TATTCTAAGT AAGGCAGTGT
  CATTTAGAAG ACAGTGATTA CTTGATGAAG AGCTTGAACT GTCAGGGCTT TTGCGGTTCC
  CTTTGCTTGA TTTGACTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49390569	NES12654142	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32719857					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390569	NES12654142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9527973 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	1853 bp proximal
Rr499183	regulatory region 499183	178 bp proximal
Rr499184	regulatory region 499184	1931 bp proximal
Tssr130645	transcription start site region 130645	811 bp downstream
Tssr130646	transcription start site region 130646	585 bp upstream
Tssr130647	transcription start site region 130647	603 bp upstream
Tssr130648	transcription start site region 130648	640 bp upstream
Tssr133701	transcription start site region 133701	156 bp downstream
Tssr133702	transcription start site region 133702	191 bp downstream
Tssr133703	transcription start site region 133703	1810 bp downstream
Tssr133704	transcription start site region 133704	1851 bp downstream
Tssr133705	transcription start site region 133705	1926 bp downstream
Tssr133706	transcription start site region 133706	1963 bp downstream
Tssr133707	transcription start site region 133707	1981 bp downstream