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rs32720258 SNP Detail
Summary
  • ID
    rs32720258
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:87210003 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GCTTT CCAGCACTTA CTTTTCAAAG
    R
    GGCTGGCCCC TGATCTCAGC CCCCT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
C57BL/6J
DBA/2J
ss45184642 mCV24367543 ABI CRAMUS_MOUSE f SNP G G A G
ss144881140 ENSMUSSNP6496137 ENSEMBL ENSEMBL_Sanger f SNP G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
C57BL/6J
DBA/2J
rs32720258 SNP G G A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:87210003 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Efhd1 EF hand domain containing 1 Intron
Noncoding-Transcript-Variant
Rr414772 regulatory region 414772 within coordinates
Rr414773 regulatory region 414773 250 bp distal
Rr414774 regulatory region 414774 82 bp distal
Tssr7837 transcription start site region 7837 519 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory