rs32720520 SNP Detail

Summary

• ID
  rs32720520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140428618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCTGTCTA GACGCTCAGG GGGAAAAAAC AAGAGAATCT
  GACACTCTCC CGAGCCCCGA AGACGCCTTG TGACGCGCAG GCCGCGCTGC GTGCAAGGGC
  R
  TGCGGAGCGC GCAAGCGGCG GGGCCCAGCG GGGCCTGCGG CGTGGCGCCG GGCGTCCGGG
  ACGCAGGCTC GGGTGGGCGG CCCGGCTGGG CGGTGGGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45685328	mCV23725087	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32720520					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140428618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	1328 bp distal
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	37 bp upstream
Gm69529	predicted gene, 69529	837 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	1424 bp distal
Rr603518	regulatory region 603518	756 bp distal
Rr603519	regulatory region 603519	48 bp distal
Rr603520	regulatory region 603520	within coordinates
Rr603521	regulatory region 603521	103 bp proximal
Tssr39970	transcription start site region 39970	1425 bp downstream
Tssr39971	transcription start site region 39971	1352 bp downstream
Tssr39972	transcription start site region 39972	1332 bp downstream
Tssr39973	transcription start site region 39973	1309 bp downstream
Tssr39974	transcription start site region 39974	961 bp downstream
Tssr39975	transcription start site region 39975	822 bp downstream
Tssr39976	transcription start site region 39976	778 bp downstream
Tssr39977	transcription start site region 39977	694 bp downstream
Tssr39978	transcription start site region 39978	119 bp upstream
Tssr39979	transcription start site region 39979	140 bp upstream
Tssr39980	transcription start site region 39980	159 bp upstream
Tssr39981	transcription start site region 39981	203 bp upstream
Tssr39982	transcription start site region 39982	215 bp upstream
Tssr39983	transcription start site region 39983	301 bp upstream
Tssr39984	transcription start site region 39984	526 bp upstream
Tssr39985	transcription start site region 39985	588 bp upstream
Tssr39986	transcription start site region 39986	629 bp upstream
Tssr39987	transcription start site region 39987	774 bp upstream
Tssr39988	transcription start site region 39988	870 bp upstream
Tssr39989	transcription start site region 39989	909 bp upstream
Tssr44270	transcription start site region 44270	1657 bp upstream
Tssr44271	transcription start site region 44271	1624 bp upstream
Tssr44272	transcription start site region 44272	1484 bp upstream
Tssr44273	transcription start site region 44273	218 bp upstream
Tssr44274	transcription start site region 44274	1091 bp downstream