rs32720838 SNP Detail

Summary

• ID
  rs32720838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGCCAGC CCAGGGATGA GAGGAGGCAA GAGGAGCTGG
  CAGTGCATGG AGGGACAGCC AGCAACCAGA CACTGGGTTG TAGGTAAAGA TGATCAGTGA
  R
  AGAGAAACCC CAGTGGAAAA GAATGAGGAA GGCAGCCTCT CCCTTCTGAG GAGAAGCACA
  GAGCCCCTCC TTTGTTCCCG AGTCTGATTA TGACTGGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45185689	mCV23614874	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss120007481	PARCsnp_1.17819	PARC_SEQ	INBRED	f	SNP			A	G
ss120010392	PARCsnp_1.07463	PARC_SEQ	INBRED	f	SNP			A	G
ss146184064	ENSMUSSNP969920	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32720838					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039754 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Rr423487	regulatory region 423487	1359 bp proximal
Tssr10179	transcription start site region 10179	1842 bp downstream
Tssr15169	transcription start site region 15169	1983 bp upstream
Tssr15170	transcription start site region 15170	1961 bp upstream
Tssr15171	transcription start site region 15171	1943 bp upstream
Tssr15172	transcription start site region 15172	1862 bp upstream
Tssr15173	transcription start site region 15173	1768 bp upstream
Tssr15174	transcription start site region 15174	1714 bp upstream
Tssr15175	transcription start site region 15175	165 bp upstream
Tssr15176	transcription start site region 15176	877 bp downstream
Tssr15177	transcription start site region 15177	931 bp downstream
Tssr15178	transcription start site region 15178	955 bp downstream
Tssr15179	transcription start site region 15179	977 bp downstream
Tssr15180	transcription start site region 15180	1182 bp downstream
Tssr15181	transcription start site region 15181	1758 bp downstream