rs32724479 SNP Detail

Summary

• ID
  rs32724479
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4266297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCTAGAAAT AGAGCCCTGG CCAGGGGTCT TCATAGGGGC CCTCTCTCCT TTCCCAGAAG
  CTGGGGGCCT GTTGGCTTCA GGGAGAAGAC AAAAATCAGT GGTACTTCTG AAAAAGAGGA
  GTATCTAAGA AGGAAGAGAG AAGGTAAGCA GAGTGCAGAT GGAGGTCACA AATAAAGCTG
  AGTACCTGGG CTACGAGGAC CTGCCCCAGC ACTGCGCGCT GGTGCCCCGT GAATAGTGGT
  CTGTGGAAGA GCTGCTTTGC TGGTCTGTGG AAGAGCTGCT TTGCTGGTCT GTGGAAGAGC
  K
  GCTTTGCTGG TCTGTGGAAG AGCGGCTTTG CTGGTCTGTG GAAGAGCGGC TTTGCAGACG
  CCTGGGGCTC GCTCCACCAG GGACCTTCGC CCCATAGCTC CGTTTGCTTC CAAGACTCGA
  AGGGCAGCAG TGGTCACAGG GGGAGGAGGT CGAGCGGACC CAGAAGGAGG CCTAGGGGTC
  AGAAGGCCAG GGGGTCGTGA AGACGGCATT CGCGGGGCAG TTCCTGATTT GACGCTATCC
  CTCTTGTCCA TACCGCACCT AATGAGGAAG ACAGGAGGCT TGGTATCCCA GGTCCTGAAC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss46182471	mCV23159909	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss148555642	ENSMUSSNP1330516	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs32724479					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4266297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20045	CpG island 20045	1342 bp distal
Cpgi20046	CpG island 20046	58 bp proximal
Gm64374	predicted gene, 64374	759 bp downstream
Prr36	proline rich 36	within coordinates
Rr658993	regulatory region 658993	1005 bp proximal
Tssr80247	transcription start site region 80247	1994 bp upstream
Tssr80248	transcription start site region 80248	1940 bp upstream
Tssr80249	transcription start site region 80249	1917 bp upstream
Tssr80250	transcription start site region 80250	1812 bp upstream
Tssr80251	transcription start site region 80251	1714 bp upstream
Tssr80252	transcription start site region 80252	1673 bp upstream
Tssr80253	transcription start site region 80253	1567 bp upstream
Tssr80254	transcription start site region 80254	1507 bp upstream
Tssr80255	transcription start site region 80255	286 bp upstream
Tssr80256	transcription start site region 80256	682 bp downstream
Tssr80257	transcription start site region 80257	721 bp downstream
Tssr80258	transcription start site region 80258	816 bp downstream
Tssr80259	transcription start site region 80259	836 bp downstream
Tssr80260	transcription start site region 80260	882 bp downstream
Tssr80261	transcription start site region 80261	964 bp downstream
Tssr80262	transcription start site region 80262	1169 bp downstream