rs32725259 SNP Detail

Summary

• ID
  rs32725259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180595639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCAGAA TTAAGAAGCC
  ACTCCAACAG GCAGCAGGTA CATTAGAGGG ATCTCTACAG AGGCTCCCTC CCCACCCAGC
  TCCCTTCCTG TGAGGTCCCC AGCAGGACCA GGACTAACTC CAGCACCCTC TGCAGCCTCA
  CCACCACCCA CCACCCACCC CCTTGCACTA GCGGGAAGTT GCCTGGGTCT GGCTCCATTA
  Y
  GGGTCTCGAC ACAAGGTTGT GTTGGGCCTG GGTAGGGCAG CCCTTCCTGG TTGCCAGAGC
  TGCAGCGGTG TCTGAGCCAC CTTTCCAAGC AGAAACCCAA GAACCGAAGC CAAATAACTA
  CTCTCTATTG ATCTGGAACC TCCAATAGGC TCGGTAAACA AGGGAGAATT TAAAAGGGGA
  ATGCTCAGCT GCCATCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720428	NES10670913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32725259					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720428	NES10670913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180595639 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	153 bp proximal
Gm38293	predicted gene, 38293	within coordinates
Rr424563	regulatory region 424563	1157 bp distal
Rr424564	regulatory region 424564	within coordinates
Rr424565	regulatory region 424565	288 bp distal
Rr424566	regulatory region 424566	5 bp proximal
Rr424567	regulatory region 424567	562 bp proximal
Rr424568	regulatory region 424568	1364 bp proximal