rs32725262 SNP Detail

Summary

• ID
  rs32725262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180595735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTACGGGTC TCGACACAAG GTTGTGTTGG GCCTGGGTAG
  GGCAGCCCTT CCTGGTTGCC AGAGCTGCAG CGGTGTCTGA GCCACCTTTC CAAGCAGAAA
  Y
  CCAAGAACCG AAGCCAAATA ACTACTCTCT ATTGATCTGG AACCTCCAAT AGGCTCGGTA
  AACAAGGGAG AATTTAAAAG GGGAATGCTC AGCTGCCATC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720431	NES10670915	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32725262					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720431	NES10670915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180595735 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	57 bp proximal
Gm38293	predicted gene, 38293	within coordinates
Rr424563	regulatory region 424563	1253 bp distal
Rr424564	regulatory region 424564	within coordinates
Rr424565	regulatory region 424565	384 bp distal
Rr424566	regulatory region 424566	70 bp distal
Rr424567	regulatory region 424567	466 bp proximal
Rr424568	regulatory region 424568	1268 bp proximal