rs32726147 SNP Detail

Summary

• ID
  rs32726147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180596312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTGCAA TCAAGAAGAC
  ACGCGCATAG GGTCTGTGGA TCTGGGTCAC CCCTCCCGCT CTGGTCTGGG GACTGTGCGC
  CCCAGGCTCT CAAGATGGCC ACCAGAGGGC TCACGAGCGC CGCCACGAGG GCTCGACGCC
  CTGCGCCCCT GGGCGCAGGA CCCAGGTCGG GGTGCTGAGG AAGATCAGAC CCGGGCCGTT
  Y
  ACTCAGTGCC CCTACCTAAG GCGGTCAAGT GATACTGGCA CTGTGGAGGG ACCATCATGA
  GGACCCTCTC TAGGACCCGA GCTACTGGTG ACCACCAGCC CGAGAACACA GTTAGTTGGG
  TCATTGTGCG ACCTCCATGG TGGTGGTGGA GGGGGCAGCT AATCCTCCTG AAACTGGGTC
  TCAGTTTGCT GTGACAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720437	NES10670918	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32726147					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720437	NES10670918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180596312 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	within coordinates
Gm38293	predicted gene, 38293	91 bp upstream
Rr424563	regulatory region 424563	1830 bp distal
Rr424564	regulatory region 424564	112 bp distal
Rr424565	regulatory region 424565	961 bp distal
Rr424566	regulatory region 424566	647 bp distal
Rr424567	regulatory region 424567	within coordinates
Rr424568	regulatory region 424568	691 bp proximal