rs32727017 SNP Detail

Summary

• ID
  rs32727017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180597774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTCAGCTC CAGGCCTCCA AGGGAAGGCC TGCTTCACCC
  CACCTCCCAA CTCTCCCTCT CCCTCACATC AGCAGAAATC TCTGTTGTTC ATTTGCTGCC
  Y
  ATAAATCCTT TAATGTGGTA GAGGAGATGA ATAGGGAAAA GTTAGTGCTT GGAAGGAGGG
  GGTGGGAGTG TCCAAATTTT AAGGCATTCT TTGGCATTAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46720449	NES10670849	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32727017					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720449	NES10670849	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180597774 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	1433 bp distal
Gm38293	predicted gene, 38293	1553 bp upstream
Rr424564	regulatory region 424564	1574 bp distal
Rr424567	regulatory region 424567	1059 bp distal
Rr424568	regulatory region 424568	750 bp distal