rs32727317 SNP Detail

Summary

• ID
  rs32727317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180769542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG TAACGCGTGG TCCTAGGGAA
  Y
  GCTGGAAATG TTGTTCTTTA TTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45185866	mCV25327859	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss146388070	ENSMUSSNP1277419	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320160469	CHEV_1_182872108	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32727317					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180769542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	within coordinates
Cpgi1128	CpG island 1128	1404 bp proximal
Rr424644	regulatory region 424644	926 bp distal
Rr424645	regulatory region 424645	573 bp distal
Rr424646	regulatory region 424646	within coordinates
Rr424647	regulatory region 424647	493 bp proximal
Rr424648	regulatory region 424648	1902 bp proximal
Tmem63a	transmembrane protein 63a	367 bp upstream
Tssr10503	transcription start site region 10503	348 bp upstream
Tssr10504	transcription start site region 10504	382 bp upstream
Tssr10505	transcription start site region 10505	457 bp upstream
Tssr10506	transcription start site region 10506	475 bp upstream
Tssr10507	transcription start site region 10507	523 bp upstream