rs32727858 SNP Detail

Summary

• ID
  rs32727858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:33962278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTCTA TTTTGCAAAG
  CGCAATAAAG TTAAGGATGC AGATTTCATC CCAAGAAAGA TCAAGAGAAG ATAATGTGAA
  GCCGGTGGGT AAACGCAGAT GGAGTTCTAA TACAGCTAAA CGACCAGAGG AGGTCAGGAA
  GGAGAGCACA CTAAATAAGA AGTCAGAGGG GAGAGCCGAG CATAGCACTG TGTGTACACG
  R
  TCCAGTGCTT GGGCAGCTGA AGTGGGAGGA TGTCTGGAAT CATGAGCTAA AGACCCTGCT
  GGACAACAAA GTGAAGCCAA ATCTCAAGAA GCAAGCCCAG ACCCCCCAAA TAACTAACAA
  CCCACCCAAA GACCCCACCC ACCAACAGGA CTCCAGAGAA GGTACACTGA ACATTGGTAA
  AGACACAGAC ATCAAATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45185933	mCV23733546	ABI	CRAMUS_MOUSE	f	SNP	A		G					G	G
ss50942604	NES13471473	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G
ss148879460	ENSMUSSNP3971702	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32727858					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942604	NES13471473	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33962278 () rs orientation: forward

Symbol	Name	Function Class
Dst	dystonin	Intron
Gm37354	predicted gene, 37354	within coordinates
Tssr6161	transcription start site region 6161	721 bp downstream