rs32728274 SNP Detail

Summary

• ID
  rs32728274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84442334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGCGCGGTG CAGCGGGAGG AGTGGGCGCA CAGCAGCGGG ACGGTTAGGC ACCTCGAGCC
  GGCGGCCGTT GGGCTCCATT GAGCATGCGC CAGGGGCGGG CCAGCCGTTA GTAGGTCGGC
  TTCCGGGGAC GGTGATGGGA ATGGCGGCTC TCGGAGGCCC CATGTGTACC GTGGTGGGAT
  TGAGGGACCG GGCGGATCCA CACTGCGTTT TCGGTCACGG CGAGAGGACT CAGGCTATCT
  GGGCAGACGT CCCGAGTCTG CAGTCACCGG CTTCCCGTCT TGTTCCGCCG CTCGCCCAGG
  W
  GATTCTTCTC CAGACTCTGA TGCGGAAGGC CAGTGTCGCG CCTCTTAGGA ACGTGGCCAT
  TCACTCGGCG TCGCTTTCCC GGTGTGAGGC CGGTTCAGCC CGTTGCCTCT GGTCTGCCTG
  GACCTATAGT TGAAACTTTA GGTCTGTGAC AGTCTGGGTT CACTTGTTTC ATTTTCCTGG
  TTGAAGCAAG GCCTGACGTA TTGGGGGTGG GGGGCCATAC GCTCCGAGTT GCGCCTCAAC
  TAGTTCCCGG AACCTTTTGT GTGCCTAGAT TCTTGAGACA GGATCTCTTT ACATAATCCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46183469	mCV23003777	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32728274					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84442334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			within coordinates
Ddx39a	DEAD box helicase 39a			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr382392	regulatory region 382392			1598 bp downstream
Rr401010	regulatory region 401010			430 bp downstream
Rr666291	regulatory region 666291			1157 bp distal
Rr666292	regulatory region 666292			147 bp distal
Rr666293	regulatory region 666293			within coordinates
Rr666294	regulatory region 666294			883 bp proximal
Tssr78284	transcription start site region 78284			501 bp downstream
Tssr78285	transcription start site region 78285			467 bp downstream
Tssr78286	transcription start site region 78286			417 bp downstream
Tssr78287	transcription start site region 78287			393 bp downstream
Tssr78288	transcription start site region 78288			181 bp downstream