rs32728682 SNP Detail

Summary

• ID
  rs32728682
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135693294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG ATTTCTCTCT CCCCACTTTA
  W
  ACACACTATT TTCTAACGCC TACCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45186415	mCV23239870	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
ss145545540	ENSMUSSNP3915790	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
ss319993137	CHEV_1_137662133	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32728682					SNP	A	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135693294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	within coordinates
Gm70736	predicted gene, 70736	561 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	563 bp upstream
Rr372092	regulatory region 372092	within coordinates
Rr419268	regulatory region 419268	1329 bp distal
Rr419269	regulatory region 419269	73 bp proximal
Tssr223	transcription start site region 223	514 bp upstream
Tssr224	transcription start site region 224	633 bp upstream
Tssr8974	transcription start site region 8974	529 bp upstream
Tssr8975	transcription start site region 8975	651 bp upstream
Tssr8976	transcription start site region 8976	662 bp upstream
Tssr8977	transcription start site region 8977	681 bp upstream
Tssr8978	transcription start site region 8978	685 bp upstream