rs32729324 SNP Detail

Summary

• ID
  rs32729324
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93272086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA TATGTGTGTT AGTGTATACG
  M
  ACAGACTTGT ACATATGTAC ATGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45186515	mCV27561194	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	C
ss144957795	ENSMUSSNP6731059	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss319843456	CHEV_1_95240941	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32729324					SNP	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93272086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	164 bp distal
Mir6902	microRNA 6902	1728 bp upstream
Pask	PAS domain containing serine/threonine kinase	849 bp upstream
Ppp1r7	protein phosphatase 1, regulatory subunit 7	within coordinates
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	1402 bp downstream
Rr396176	regulatory region 396176	640 bp downstream
Tssr163	transcription start site region 163	673 bp downstream
Tssr8169	transcription start site region 8169	692 bp downstream
Tssr13015	transcription start site region 13015	1792 bp upstream
Tssr13016	transcription start site region 13016	1767 bp upstream
Tssr13017	transcription start site region 13017	1744 bp upstream
Tssr13018	transcription start site region 13018	1733 bp upstream
Tssr13019	transcription start site region 13019	1561 bp upstream
Tssr13020	transcription start site region 13020	1475 bp upstream
Tssr13021	transcription start site region 13021	1453 bp upstream
Tssr13022	transcription start site region 13022	840 bp upstream