rs32729512 SNP Detail

Summary

• ID
  rs32729512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14928827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCCATA AACTGTACTA
  TTTCTTTCTT AGGATCTCTT CCCTTCCATC TATAATTAGA TAATGTAATA TTCATATATG
  TGAATATTAA ATATAATAAT CTTCCATCCT TAATGCAGAG ATATTTCTTT TTGTAGTGTT
  GGTAAATGTC TACAAATGGC CTATGTTTCC ATGTCTCCTA CTACCCACGA CACCTACCAT
  Y
  CGTACCAGTT AGAAAGCTCT CTTAAATAAT CAATTTTGAT CATGTCATTT GTCTGAAAGC
  CTTAAAAATG TCACTTAAAA GATCCACCAT TAAGGGCTGG AGAGATGGCT CAGCAGTTAC
  GAGCGCTGAC TGCTCTTCCA GAGGTCCTGA GTTCAATTCC CAGCAACCAC ATGGTGGCTC
  ACATCCATCT GTAATGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45686611	mCV23737502	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321046994	CHEV_4_14855974	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32729512					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14928827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	1010 bp proximal
Gm11837	predicted gene 11837	1081 bp upstream
Gm68732	predicted gene, 68732	900 bp downstream
Rr589248	regulatory region 589248	534 bp proximal
Rr589249	regulatory region 589249	1035 bp proximal
Rr589250	regulatory region 589250	1623 bp proximal
Rr589251	regulatory region 589251	1860 bp proximal
Tssr36545	transcription start site region 36545	1033 bp upstream
Tssr36546	transcription start site region 36546	1792 bp upstream
Tssr36547	transcription start site region 36547	1882 bp upstream