rs32729734 SNP Detail

Summary

• ID
  rs32729734
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3673041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGATTGA AGCTAGCCTG
  GGCTGCATGG GGATAGAGAG AGGGAGACAG GAGAGGAAGC TGTAATTCCA GCATTCCAGC
  ACTCAGGAGA TGGATGCAAG AGGATTGAGA ATTCTGGCTA TTCTCTGCCG CCTGGTGAGC
  TCAAGGCTAG CCTGTAGTAT ATGAGACCCC ATCTTAAAAA GAGGGGAGGG CACAAATGGT
  K
  TCACATATTA CCTTTTCCCC GAGGGATGAA GCTGAACTCA CTTGTACAGT GATTGTGATT
  GGCATGGGGC TCCCAGTGTG GATACTGAAC TCTGAAGCCA AAGGGAGGAT AGTGTGAGTG
  AGTCCAGGCT GTGAGGCCTG TACTCTTCCT TCCTTCCCAT CACACCCCTT TCCCCATTCC
  AGCGCCAGGA GCTAGAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46183902	mCV22852710	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss148547060	ENSMUSSNP6029036	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32729734					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3673041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1322 bp distal
Pcp2	Purkinje cell protein 2 (L7)	330 bp downstream
Pet100	PET100 homolog	within coordinates
Rr400746	regulatory region 400746	1624 bp downstream
Rr658948	regulatory region 658948	1736 bp distal
Rr658949	regulatory region 658949	1429 bp distal
Rr658950	regulatory region 658950	1574 bp distal
Rr658951	regulatory region 658951	31 bp distal
Tssr76075	transcription start site region 76075	1548 bp downstream
Tssr76076	transcription start site region 76076	1458 bp downstream
Tssr76077	transcription start site region 76077	1432 bp downstream
Tssr80202	transcription start site region 80202	1718 bp upstream
Tssr80203	transcription start site region 80203	469 bp downstream
Tssr80204	transcription start site region 80204	1528 bp downstream
Tssr80205	transcription start site region 80205	1618 bp downstream
Tssr80206	transcription start site region 80206	1880 bp downstream
Tssr80207	transcription start site region 80207	1929 bp downstream
Tssr80208	transcription start site region 80208	1948 bp downstream
Tssr80209	transcription start site region 80209	1984 bp downstream
Xab2	XPA binding protein 2	1730 bp upstream