rs32730102 SNP Detail

Summary

• ID
  rs32730102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63130649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA TCTGCCCTAG TGCAAAAGAC
  Y
  TCGGGAAGAT TGAGCTCCAT GAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45686430	mCV22875339	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss146440566	ENSMUSSNP3457981	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32730102					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63130649 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	1597 bp upstream
Cpgi14368	CpG island 14368	1560 bp proximal
Rr593488	regulatory region 593488	1264 bp proximal
Rr593489	regulatory region 593489	1528 bp proximal
Tssr1192	transcription start site region 1192	1612 bp upstream
Tssr37533	transcription start site region 37533	1676 bp upstream
Tssr37534	transcription start site region 37534	1722 bp upstream