rs32731687 SNP Detail

Summary

• ID
  rs32731687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180696453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGTCCTG GGTTCTTTAA
  GAAGTCAGGC GGAATAAGGC AAGGGGAGCA AAGCCAGCAA GCAGCACTCC TCACCCTCTC
  TGTCAGCCCC TCCCGTCAGG TTCCTGCCCT GTGTGAGTTC CTGTCCTGAC TTCTTTCAGA
  GATATCAGCA ATGTATCCTC ATGTAGGTAT CTATCTGAGC CTTAAAAGGA CATTTGAGGA
  Y
  GTTTGAAAGG GCCAGCTACA GTGGCTTGCA CTGTTCTGTT TTGAGACAGG GTTTCTCTGT
  GTAGCCATGG CTGTTCTGGA AGACCAGGCT GGCCTCAAAC TCAGAAATCT ACCTGCCTCT
  GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCCACCACTG CCTGGTCACA CTTTTTTTTT
  TTTAAGATTT ATTTATTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46721084	NES10664297	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32731687					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46721084	NES10664297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180696453 () rs orientation: forward

Symbol	Name	Function Class
Gm71256	predicted gene, 71256	within coordinates
Rr424611	regulatory region 424611	1444 bp proximal
Sde2	SDE2 telomere maintenance homolog (S. pombe)	775 bp downstream