rs32731861 SNP Detail

Summary

• ID
  rs32731861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188710461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGCTCAA GACACTTGTC ACCAAGCCTG GTGACCTGAG
  TTTGATCCTC AGCAGAAGAG AACTGACTCC ACTAAGTTAC CCTCTGACCT CCAACGTGTG
  Y
  GCTCAGGCAA GAGTGCACGC ACACACAGCA TTTTCATATG TGTGTGTACA CAGACACACA
  TATTTGTTCA AATGTTTGTT GTTGAAATAT TCATGTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45186825	mCV24893773	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss146483178	ENSMUSSNP5054157	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320190025	CHEV_1_190802143	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32731861					SNP	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188710461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			25 bp proximal
Rr425734	regulatory region 425734			1725 bp proximal
Rr425735	regulatory region 425735			1978 bp proximal
Tssr15705	transcription start site region 15705			140 bp downstream