rs32732960 SNP Detail

Summary

• ID
  rs32732960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84930437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA TTTTCCGATC CTCGCTGCTT
  Y
  GCGAGAGTGG AAAGTATTTG AGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss46184147	mCV24182218	ABI	CRAMUS_MOUSE	f	SNP		T	C				C	C
ss50592135	NES14063389	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C		C	C	T	C	T
ss145374904	ENSMUSSNP6988208	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs32732960					SNP	T	T	C	T	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50592135	NES14063389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84930437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20683	CpG island 20683	1954 bp distal
Cpgi20684	CpG island 20684	within coordinates
Gm37352	predicted gene, 37352	759 bp downstream
Gm56841	predicted gene, 56841	within coordinates
Gm65345	predicted gene, 65345	472 bp downstream
Rr178128	regulatory region 178128	764 bp proximal
Rr186983	regulatory region 186983	within coordinates
Tssr78376	transcription start site region 78376	480 bp upstream
Tssr78377	transcription start site region 78377	1421 bp upstream
Tssr82085	transcription start site region 82085	1838 bp upstream
Tssr82086	transcription start site region 82086	1816 bp upstream
Tssr82087	transcription start site region 82087	1791 bp upstream
Tssr82088	transcription start site region 82088	313 bp upstream
Tssr82089	transcription start site region 82089	281 bp upstream
Tssr82090	transcription start site region 82090	137 bp upstream
Tssr82091	transcription start site region 82091	301 bp downstream