rs32735666 SNP Detail

Summary

• ID
  rs32735666
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93887293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCCTAAGCTA AGGCTGAGGG ACAATCCAAT CACGTATAAG CTCTGGGCAG AGTCGGGAAA
  ACCAAGCGTT ATTCCTGGGT TAGTGTTTGC CAAGCTGACA CAGGCAGGCT AGTTCGTTCC
  GGTTGTTCTT TCCCCCTTTC CTTTCTTTCC TGGCCCTCTC CTCCTCTCCT TTCACTGGCT
  TCTCTTTCTT TCCTTCCTTC CATACCAGTC CATGCTGGTC TTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCCCTCTTT CTCTTTCTTT CTCTCTCTCT
  M
  TCTCTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTCCTTCTCC
  TTCTCCTTCT CCTTCTCCTT CTCCTTCTCC TTCTCCTTCT TCTTCTTCTT CTTCTTCTTT
  CTTCTCCTCC TCCTCCTGCT CTCTCTCCAT TATAATTTTT TCCCTTCTCC TTACTTCTCT
  CTCGCCTCTG CTTTTGCTCC CCCCTCCTCC ATTTCTCTCT TTTTCTGCTG GTGGACAAGG
  ACTCGCTGCT CTATCCTCTC TGAGCTGCTG AATGCACAGG AAGGCCCGCG CACCGCAGGC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39443358	mCV25392282	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32735666					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93887293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	187 bp distal
Cpgi8494	CpG island 8494	266 bp proximal
Gm31175	predicted gene, 31175	1290 bp upstream
Gm60844	predicted gene, 60844	1332 bp upstream
Rr520042	regulatory region 520042	1493 bp distal
Rr520043	regulatory region 520043	1343 bp distal
Rr520044	regulatory region 520044	842 bp distal
Rr520045	regulatory region 520045	326 bp proximal
Rr520046	regulatory region 520046	1250 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139539	transcription start site region 139539	1500 bp downstream
Tssr139540	transcription start site region 139540	1184 bp downstream