rs32736493 SNP Detail

Summary

• ID
  rs32736493
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50406284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTGGAGC TTGAATCAGA
  CTTTCCTACG GTCCGTATGT GTGTGTGGAC AGGATGGAAA GTGGGGAGTG GTGACTGATA
  GGTGGCAGCG TGGACCCGGA GGACTTTTTC TCTAGTTTCC TGTCCGTAAC TGAATCGCAG
  GTGGGGTAAA CTGAGCCCCA GGCAGATCAC ACCCTGGCAA CATAAGGCTG TGTTAAGCGG
  M
  CATTGTTTAT TTTTGAGGGA ATTCTTGCAG TCTACTGTCC TTTTACAGCC ACTTGACAGA
  ATGACTGTAC CCTGCGGGAC GCCAGGAAGG ATAACTTGAG CTTAGTGTAT GGGAAAAGCC
  AAGTTAAACT AGAGGAAGAT ATCAGTAGCC CGCCTTGTAT GTGAGGGGCC TGAAAGGCAG
  AGGTGTTGCC TGACTTGATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46318897	mCV24342308	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss47706256	NES11306373	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		C	A	A	A	C	A	A	A	A
ss136476427	ENSMUSSNP3974855	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32736493					SNP	C	C	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706256	NES11306373	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50406284 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678654	regulatory region 678654	447 bp distal
Rr678655	regulatory region 678655	853 bp proximal
Rr678656	regulatory region 678656	1578 bp proximal
Tssr2866	transcription start site region 2866	927 bp downstream
Tssr85023	transcription start site region 85023	838 bp downstream
Tssr85024	transcription start site region 85024	712 bp downstream
Tssr85025	transcription start site region 85025	451 bp downstream
Tssr85026	transcription start site region 85026	1792 bp upstream