rs32738489 SNP Detail

Summary

• ID
  rs32738489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:36350369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagcctcca gtattacatc tgttaaaagg
  aagatgatTC AGTAAGGCCT GCAGAGATGC TCAGCCCCAG GGAGCCCTGG AGAGATGAGC
  TTTGGTGGAG CCATAGCCAT AGCTAGCAGA AAGAGAAGTA AGGAATGGCT GGAAAACACC
  R
  GCAAGTTTGG AAAGGGAGAC TGAGACCCGG CCCTTAGTGC TGTAGCTTAG CATCCACAGC
  CCGAGCTGCC CCTGACACAG CCTTGACATT GACCCATGAG GAGCTGCGGC AGCTTCCCTG
  CTGTACCTGT GCCCACCTGC CTGCGGCCTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45187806	mCV27594774	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss51238006	NES14282131	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G	G		G	G	A	G		G
ss148924925	ENSMUSSNP515572	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss319688342	CHEV_1_36368133	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32738489					SNP	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238006	NES14282131	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36350369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arid5a	AT-rich interaction domain 5A			Intron
				Noncoding-Transcript-Variant
Gm70518	predicted gene, 70518			865 bp downstream
Rr409285	regulatory region 409285			1110 bp distal
Rr409286	regulatory region 409286			481 bp distal
Tssr11252	transcription start site region 11252			1665 bp upstream