rs32738574 SNP Detail

Summary

• ID
  rs32738574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50407937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAATCCA AAATGTGTTT
  GAGCTCTAAA TTGAGGGTCA AAAAAATCCT CTGTCCATGG GAGTGAGAGG GACCCAATTC
  CACACCTACA GTTACAAAGA AGGCTTTACA AATACCTTTA CGGAGTGCAG TGGCCCCGAC
  TCAGGCTTAC TGTAGACAGC CACCTTTCCT TGCTTTGGTT TGAGACCCTT TACCGTTTCA
  R
  CATAGTGTTA ACGCTAGCAA ACCACAGATA AACGGCTTGG CAGACCCTAG AGACAGCACA
  GCTTAGCCAG CGTCTCAGAG GGCTCACCCC AGCCCCACCC CTACCCCTCA GACCTGTAAG
  AAAGAAGCCT GAGGCACTGC TTAAGTCAGC CTCTGCTCAC TTCTCTGGAC AAGGATGTCA
  ACACTACTTC CTCAACCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47706272	NES11306315	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	A	G	A	A	A	A
ss136476451	ENSMUSSNP5173170	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32738574					SNP	G	G	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706272	NES11306315	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50407937 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Tssr85026	transcription start site region 85026	139 bp upstream