rs32738578 SNP Detail

Summary

• ID
  rs32738578
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50408319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACTTCC TCAACCCTCC
  AGCTTCTAGA ACAGTGAGTT CCACTGGATA AAGGACTTTT ATTTTAAGTG CCAGAGACAG
  AAGCTAAGGC TTCAAACATG CTGGACAAAT GCTCTACTAC TAAGCAACAG TTCGCCCCAG
  CCCTGAAGCA GGGCGTTAGA ATCAATCAAA AGTGTTTGGT GCCAAACACT GGGCTGCTTG
  S
  ATGCTGACTG ATGAAACCAT GAAATATAAT CAAGTATTCA GTCCTAGAGA AAGGCTGTGA
  ATGTTTCAGA TATGAGGAGG AAAGAGGGTA AGCTAATCCA GAGGCGGGGA TGTGAGCGAG
  ATCTGGCTGT GGAAGTGGGT ATGGGATGAA TGCTAACAGG GAAGGAAGGT TCCAGACAGG
  CTGCAGACGT GAACAAACCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47706276	NES11306274	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	G	C	C	C	G	C	C	C	C
ss136476463	ENSMUSSNP3274273	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32738578					SNP	G	G	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706276	NES11306274	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50408319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	1879 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	602 bp distal
Rr678656	regulatory region 678656	59 bp distal
Tssr85026	transcription start site region 85026	218 bp downstream