rs32738958 SNP Detail

Summary

• ID
  rs32738958
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180769717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACTGGGA ACAGGGTAGG TCCACTGCGC CCTGGTGTTC
  CCCCGCCCTG AAATCCAACT GGGCCAGCTT AGAATTTCCT GGGGACATTC AATCACGAAC
  W
  TTTGCAGATG CTCTCCAACG CCGCAACTAT CCTAGGCACG GCCCAGTGCC CTCTCAGTGG
  GGATGTGCTA GGGCACAAAG GAAAGGCAGT TCGGAGACGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46721894	NES10660651	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32738958					SNP	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46721894	NES10660651	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180769717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	within coordinates
Cpgi1128	CpG island 1128	1229 bp proximal
Rr424644	regulatory region 424644	1101 bp distal
Rr424645	regulatory region 424645	748 bp distal
Rr424646	regulatory region 424646	within coordinates
Rr424647	regulatory region 424647	318 bp proximal
Rr424648	regulatory region 424648	1727 bp proximal
Rr424649	regulatory region 424649	1860 bp proximal
Rr424650	regulatory region 424650	1894 bp proximal
Tmem63a	transmembrane protein 63a	192 bp upstream
Tssr324	transcription start site region 324	1905 bp upstream
Tssr10503	transcription start site region 10503	173 bp upstream
Tssr10504	transcription start site region 10504	207 bp upstream
Tssr10505	transcription start site region 10505	282 bp upstream
Tssr10506	transcription start site region 10506	300 bp upstream
Tssr10507	transcription start site region 10507	348 bp upstream