rs32738961 SNP Detail

Summary

• ID
  rs32738961
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180771786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA AGCCTTCTTT CTTTGCTCTA
  S
  GGTGGCCCAT TTCCCCCAGT TCTAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46721897	NES10660542	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		C	G		G
ss146388121	ENSMUSSNP4929555	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		G
ss320160480	CHEV_1_182874352	CHEVERUD	SCREENING_POP	f	SNP							G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs32738961					SNP	G	C	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46721897	NES10660542	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180771786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	1009 bp distal
Cpgi1128	CpG island 1128	598 bp distal
Rr424646	regulatory region 424646	1752 bp distal
Rr424647	regulatory region 424647	611 bp distal
Rr424648	regulatory region 424648	176 bp distal
Rr424649	regulatory region 424649	188 bp distal
Rr424650	regulatory region 424650	42 bp distal
Rr424651	regulatory region 424651	394 bp proximal
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	150 bp downstream
Tssr10503	transcription start site region 10503	1869 bp downstream
Tssr10504	transcription start site region 10504	1853 bp downstream
Tssr10505	transcription start site region 10505	1776 bp downstream
Tssr10506	transcription start site region 10506	1744 bp downstream
Tssr10507	transcription start site region 10507	1692 bp downstream
Tssr10508	transcription start site region 10508	1677 bp upstream