rs32739226 SNP Detail

Summary

• ID
  rs32739226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50409108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACATA TGGAGAGCTG
  AGAGGATTGG GGCTATCTAG ATGACACCAT TATGTATCAC CTTCCGCTAC ACCACCATGC
  AGAGATGTGA GACAAAAGTC ACCTCCTCTC TGAGTGACTC AGAACATGTA GGATTTGGGC
  CAGCTGACCT TCCTGACAAA GCAAACCAGG GCGAGGAAAT ACAATGTGCT TAAATTAGTA
  R
  TAACAATCAC AGTTTATCTG ATATGAACCA CAAGTGTTAG CATCTTCTTT TTAGTCCTAA
  CAGGAGCTTT TACTATGAGG GATAATGTTA TTTCCCAGAC ACAGAGCTAT GGTGAGCACC
  AAGAGGAAAC TTAAAAAAAT AAAAGTGTAG CAGTCAGAGA TGTGGCTTAG TTAGTAGAAC
  GCTTGCCTGA CACATACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47706284	NES11306282	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	A	G	A	A	A
ss136476478	ENSMUSSNP2195686	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32739226					SNP	G	G	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706284	NES11306282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50409108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	1090 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	1391 bp distal
Rr678656	regulatory region 678656	848 bp distal
Tssr85026	transcription start site region 85026	1007 bp downstream
Tssr85027	transcription start site region 85027	1336 bp upstream
Tssr85028	transcription start site region 85028	1366 bp upstream
Tssr85029	transcription start site region 85029	1401 bp upstream
Tssr85030	transcription start site region 85030	1446 bp upstream