rs32739230 SNP Detail

Summary

• ID
  rs32739230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50409197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAAAGT CACCTCCTCT
  CTGAGTGACT CAGAACATGT AGGATTTGGG CCAGCTGACC TTCCTGACAA AGCAAACCAG
  GGCGAGGAAA TACAATGTGC TTAAATTAGT AATAACAATC ACAGTTTATC TGATATGAAC
  CACAAGTGTT AGCATCTTCT TTTTAGTCCT AACAGGAGCT TTTACTATGA GGGATAATGT
  Y
  ATTTCCCAGA CACAGAGCTA TGGTGAGCAC CAAGAGGAAA CTTAAAAAAA TAAAAGTGTA
  GCAGTCAGAG ATGTGGCTTA GTTAGTAGAA CGCTTGCCTG ACACATACCT CGTTCTGGGT
  TCACTGTTCT ACATTTTATA AAGCAGGTGT GGCAGCATAC ACCTGCAGTG TCTATACACA
  AGAAGGAGAG TCGGGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47706288	NES11306287	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	T	T	T	T
ss136476481	ENSMUSSNP1393186	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32739230					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706288	NES11306287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50409197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	1001 bp proximal
Plet1	placenta expressed transcript 1	Intron
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	1480 bp distal
Rr678656	regulatory region 678656	937 bp distal
Tssr85026	transcription start site region 85026	1096 bp downstream
Tssr85027	transcription start site region 85027	1247 bp upstream
Tssr85028	transcription start site region 85028	1277 bp upstream
Tssr85029	transcription start site region 85029	1312 bp upstream
Tssr85030	transcription start site region 85030	1357 bp upstream