rs32739624 SNP Detail

Summary

• ID
  rs32739624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGCACACACA CACACACATC TCTCACACAC AATTCCAGTC AGAATGTCCC AGTGTATAGA
  ACAACGTTAC TGGCTGGAAA TGTATGTGGT AGAAACAAGT AAATAAAATA AAAGCACTAT
  AAACATTTTG AAAACTTTGC CTATGGGACC ATTGAAGAGG AGGTAAAGAT AAGGGGCAGG
  CAATGCTCAG GGTCACCTTC CATCAGGAAG GGACAGTTCT CTTCCTTCCC ACACTTGCTA
  CAAAGTCCTT CATCTTCAGG GAGAGTAAGG GGAACACACA GAATGTAAAT ATTAATATAA
  R
  ATAAATAAAA TATTAATATA AAATAAATAA AATATTAATA TAAAATAAAT ATTAATATAA
  ATTACTCTTC CATATTTTGG GGTGATTAAT TTACTGTATG CTTGAGTTCA TCTTGGAAGT
  CTTTCTTTTC TTTCTTTTCC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTC TTTCTTTTTG
  TTTTATTGTT TTGTTTTTGT TTTTGTTTTT GTTTTTTTGA GACAGGGTTT CTCTGTGTAG
  CCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCTGCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45187277	mCV22363996	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32739624					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	1018 bp proximal
Efcab2	EF-hand calcium binding domain 2	1476 bp upstream
Gm70920	predicted gene, 70920	1301 bp downstream
Gm70923	predicted gene, 70923	1880 bp upstream
Rr20725	regulatory region 20725	1974 bp distal
Rr29069	regulatory region 29069	626 bp proximal
Rr372517	regulatory region 372517	612 bp upstream
Tssr10392	transcription start site region 10392	1408 bp upstream
Tssr10393	transcription start site region 10393	1422 bp upstream
Tssr10394	transcription start site region 10394	1429 bp upstream
Tssr10395	transcription start site region 10395	1443 bp upstream
Tssr10396	transcription start site region 10396	1463 bp upstream
Tssr10397	transcription start site region 10397	1886 bp upstream
Tssr15493	transcription start site region 15493	1806 bp downstream