rs32739960 SNP Detail

Summary

• ID
  rs32739960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50409775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGCTTT GCTTTGGGAG
  GAGTTTCAGA AGACGGAAAT GGTCCAGTAT TGAGGAATTT ACTCGTATAG GCTCTTCTGG
  GGGGGGGGGG GGAACAGGCA CACTAAAATA GCCTCATGTT GAAATTAATA AAATGTCAGC
  AAGGTCCCCT GTAAGTGTAG GCAGGCTGGG TCATAGACCT CATCTGAGTA GAGAAAAACC
  Y
  TAAGAGGTAA TTTGGCCCTT GAATTAAGAC CCTGTGGCTC AGGCCTCAGT GTCTTAATAC
  CTAGTCAAAC CCCTGTCCTT CCCAACCCCC ACCTTCAATA ACCTGGAGGA ACCAACATTT
  CTGAGGTCAG GAGCAGGCCT TTGGTTTTAC TTAGCAATAT TACTCCCTTG TATCCCTAGA
  ACACTTCCTA GGGGACCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47706298	NES11306237	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32739960					SNP	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706298	NES11306237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50409775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	423 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678656	regulatory region 678656	1515 bp distal
Tssr85026	transcription start site region 85026	1674 bp downstream
Tssr85027	transcription start site region 85027	669 bp upstream
Tssr85028	transcription start site region 85028	699 bp upstream
Tssr85029	transcription start site region 85029	734 bp upstream
Tssr85030	transcription start site region 85030	779 bp upstream