rs32740544 SNP Detail

Summary

• ID
  rs32740544
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180772679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC TCTGGGTTTG GTTTAAAGGA
  S
  AGAAGCAGGG ACATCACTCC AGGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46721912	NES10660493	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		G	G	G	G		G
ss146388164	ENSMUSSNP4830356	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		G
ss320160492	CHEV_1_182875245	CHEVERUD	SCREENING_POP	f	SNP								G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32740544					SNP	G	G	C	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46721912	NES10660493	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180772679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1127	CpG island 1127			1902 bp distal
Cpgi1128	CpG island 1128			1491 bp distal
Rr424647	regulatory region 424647			1504 bp distal
Rr424648	regulatory region 424648			1069 bp distal
Rr424649	regulatory region 424649			1081 bp distal
Rr424650	regulatory region 424650			935 bp distal
Rr424651	regulatory region 424651			within coordinates
Tmem63a	transmembrane protein 63a			Intron
				Noncoding-Transcript-Variant
Tssr324	transcription start site region 324			1043 bp downstream
Tssr10508	transcription start site region 10508			784 bp upstream