rs32740553 SNP Detail

Summary

• ID
  rs32740553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180773037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTCACT TTCCCTCAGG
  TGCGGTGCAT GTGTGAATCT GGGCTAGGGC TTGTGTGTGT TGCATCTGCG AGTCTGCGTA
  GGGGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGCG CGCGCACGAG CATGTGCATG
  CGCACAGCAG TGTCAGGAGT CAGAATTGGG ACCCTACCCC AACCCAGCAC ACCTCACTAG
  Y
  ACTTTTTGTA GTTCAGACAT CTACTTCCGG TTCTCTACAC CCCCTTTTCT CGTCCCTAAA
  ACTTCTGCCT CTCTAGCAGA AGGAAGGAAG TCCTCTGAGA ATTACAATTT AAATAGACTT
  GGGGAGGTGG GAGCCTGAGG TGGGAGGGGC TTCCTTAGAC TTCCCACTCA TAAATAATGT
  GAAGCAGGCC AGAACCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46721921	NES10660504	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32740553					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46721921	NES10660504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180773037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1128	CpG island 1128	1849 bp distal
Rr424647	regulatory region 424647	1862 bp distal
Rr424648	regulatory region 424648	1427 bp distal
Rr424649	regulatory region 424649	1439 bp distal
Rr424650	regulatory region 424650	1293 bp distal
Rr424651	regulatory region 424651	within coordinates
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	1401 bp downstream
Tssr10508	transcription start site region 10508	426 bp upstream